3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUAUUU*AUUCA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_012 not in the Motif Atlas
Homologous match to IL_4V88_393
Geometric discrepancy: 0.1218
The information below is about IL_4V88_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37842.2
Basepair signature
cWW-cWW-L-R-cWW-cWW-R-L
Number of instances in this motif group
4

Unit IDs

7AJU|1|D3|U|117
7AJU|1|D3|U|118
7AJU|1|D3|A|119
7AJU|1|D3|U|120
7AJU|1|D3|U|121
7AJU|1|D3|U|122
*
7AJU|1|D3|A|295
7AJU|1|D3|U|296
7AJU|1|D3|U|297
7AJU|1|D3|C|298
7AJU|1|D3|A|299

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DE
40S ribosomal protein S4-A
Chain DI
40S ribosomal protein S8-A

Coloring options:


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