IL_7AJU_029

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAC*GUAA

Length

7 nucleotides

Bulged bases

7AJU|1|D3|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_029 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.2144

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7AJU|1|D3|U|482
7AJU|1|D3|A|483
7AJU|1|D3|C|484
*
7AJU|1|D3|G|503
7AJU|1|D3|U|504
7AJU|1|D3|A|505
7AJU|1|D3|A|506

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JM

rRNA-processing protein FCF2

Chain UC

Something about silencing protein 10