IL_7AJU_030

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_030 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.3553

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7AJU|1|D3|G|516
7AJU|1|D3|U|517
7AJU|1|D3|A|518
7AJU|1|D3|C|519
7AJU|1|D3|A|520
*
7AJU|1|D3|U|532
7AJU|1|D3|U|533
7AJU|1|D3|A|534
7AJU|1|D3|A|535
7AJU|1|D3|C|536

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A