IL_7AJU_039

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_039 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2565

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7AJU|1|D3|G|703
7AJU|1|D3|C|704
7AJU|1|D3|U|705
7AJU|1|D3|A|706
7AJU|1|D3|A|707
7AJU|1|D3|C|708
*
7AJU|1|D3|G|730
7AJU|1|D3|C|731
7AJU|1|D3|G|732
7AJU|1|D3|A|733
7AJU|1|D3|A|734
7AJU|1|D3|C|735

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DL

40S ribosomal protein S11-A