IL_7AJU_045

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7AJU|1|D3|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_045 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1234

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7AJU|1|D3|G|867
7AJU|1|D3|G|868
7AJU|1|D3|A|869
7AJU|1|D3|C|870
*
7AJU|1|D3|G|957
7AJU|1|D3|U|958
7AJU|1|D3|U|959
7AJU|1|D3|U|960
7AJU|1|D3|U|961

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CN

Ribosomal RNA-processing protein 7

Chain DN

40S ribosomal protein S13

Chain Db

40S ribosomal protein S27-A