3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAC*GUUUU
Length
9 nucleotides
Bulged bases
7AJU|1|D3|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_045 not in the Motif Atlas
Homologous match to IL_4V88_429
Geometric discrepancy: 0.1234
The information below is about IL_4V88_429
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

7AJU|1|D3|G|867
7AJU|1|D3|G|868
7AJU|1|D3|A|869
7AJU|1|D3|C|870
*
7AJU|1|D3|G|957
7AJU|1|D3|U|958
7AJU|1|D3|U|959
7AJU|1|D3|U|960
7AJU|1|D3|U|961

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CN
Ribosomal RNA-processing protein 7
Chain DN
40S ribosomal protein S13
Chain Db
40S ribosomal protein S27-A

Coloring options:


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