IL_7AJU_049
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 7AJU|1|D3|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJU_049 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2196
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
7AJU|1|D3|U|893
7AJU|1|D3|U|894
7AJU|1|D3|G|895
7AJU|1|D3|U|896
7AJU|1|D3|C|897
7AJU|1|D3|A|898
7AJU|1|D3|G|899
*
7AJU|1|D3|C|910
7AJU|1|D3|U|911
7AJU|1|D3|U|912
7AJU|1|D3|G|913
7AJU|1|D3|G|914
7AJU|1|D3|A|915
7AJU|1|D3|U|916
7AJU|1|D3|U|917
7AJU|1|D3|U|918
7AJU|1|D3|A|919
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DO
- 40S ribosomal protein S14-A
- Chain UM
- U3 small nucleolar RNA-associated protein 13
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