3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUGUCAG*CUUGGAUUUA
Length
17 nucleotides
Bulged bases
7AJU|1|D3|G|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_049 not in the Motif Atlas
Homologous match to IL_8C3A_440
Geometric discrepancy: 0.2196
The information below is about IL_8C3A_440
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_22252.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

7AJU|1|D3|U|893
7AJU|1|D3|U|894
7AJU|1|D3|G|895
7AJU|1|D3|U|896
7AJU|1|D3|C|897
7AJU|1|D3|A|898
7AJU|1|D3|G|899
*
7AJU|1|D3|C|910
7AJU|1|D3|U|911
7AJU|1|D3|U|912
7AJU|1|D3|G|913
7AJU|1|D3|G|914
7AJU|1|D3|A|915
7AJU|1|D3|U|916
7AJU|1|D3|U|917
7AJU|1|D3|U|918
7AJU|1|D3|A|919

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DA
40S ribosomal protein S1-A
Chain DO
40S ribosomal protein S14-A
Chain UM
U3 small nucleolar RNA-associated protein 13

Coloring options:


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