IL_7AJU_049

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7AJU|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_049 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2196

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7AJU|1|D3|U|893
7AJU|1|D3|U|894
7AJU|1|D3|G|895
7AJU|1|D3|U|896
7AJU|1|D3|C|897
7AJU|1|D3|A|898
7AJU|1|D3|G|899
*
7AJU|1|D3|C|910
7AJU|1|D3|U|911
7AJU|1|D3|U|912
7AJU|1|D3|G|913
7AJU|1|D3|G|914
7AJU|1|D3|A|915
7AJU|1|D3|U|916
7AJU|1|D3|U|917
7AJU|1|D3|U|918
7AJU|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain UM

U3 small nucleolar RNA-associated protein 13