IL_7AJU_056
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GUC
- Length
- 5 nucleotides
- Bulged bases
- 7AJU|1|D4|U|2
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJU_056 not in the Motif Atlas
- Geometric match to IL_4LFB_046
- Geometric discrepancy: 0.2871
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
7AJU|1|D3|G|1122
7AJU|1|D3|C|1123
*
7AJU|1|D4|G|1
7AJU|1|D4|U|2
7AJU|1|D4|C|3
Current chains
- Chain D3
- 18S rRNA
- Chain D4
- U3 snoRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain CM
- RNA 3'-terminal phosphate cyclase-like protein
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
- Chain JL
- Dimethyladenosine transferase
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