3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGAG*CAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_065 not in the Motif Atlas
Geometric match to IL_1SAQ_002
Geometric discrepancy: 0.2195
The information below is about IL_1SAQ_002
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.13
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

7AJU|1|D3|U|1669
7AJU|1|D3|G|1670
7AJU|1|D3|A|1671
7AJU|1|D3|G|1672
*
7AJU|1|D3|C|1729
7AJU|1|D3|A|1730
7AJU|1|D3|A|1731
7AJU|1|D3|A|1732

Current chains

Chain D3
18S rRNA

Nearby chains

Chain UM
U3 small nucleolar RNA-associated protein 13

Coloring options:


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