3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UA*UAA
Length
5 nucleotides
Bulged bases
7AJU|1|D3|A|505
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_081 not in the Motif Atlas
Homologous match to IL_8P9A_399
Geometric discrepancy: 0.2792
The information below is about IL_8P9A_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

7AJU|1|D3|U|482
7AJU|1|D3|A|483
*
7AJU|1|D3|U|504
7AJU|1|D3|A|505
7AJU|1|D3|A|506

Current chains

Chain D3
18S rRNA

Nearby chains

Chain UC
Something about silencing protein 10

Coloring options:


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