IL_7AQD_028

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_028 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.2597

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7AQD|1|A|C|899
7AQD|1|A|U|900
*
7AQD|1|A|A|971
7AQD|1|A|U|972
7AQD|1|A|G|973

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30