IL_7AQD_039

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7AQD|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_039 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1109

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7AQD|1|A|U|1064
7AQD|1|A|U|1065
7AQD|1|A|A|1066
7AQD|1|A|A|1067
7AQD|1|A|G|1068
7AQD|1|A|U|1069
7AQD|1|A|G|1070
*
7AQD|1|A|C|1186
7AQD|1|A|U|1187
7AQD|1|A|A|1188
7AQD|1|A|A|1189
7AQD|1|A|A|1190

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36