IL_7AQD_051

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

7AQD|1|A|G|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_051 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2834

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7AQD|1|A|G|1358
7AQD|1|A|G|1359
7AQD|1|A|A|1360
7AQD|1|A|A|1361
7AQD|1|A|G|1362
*
7AQD|1|A|C|1370
7AQD|1|A|G|1371
7AQD|1|A|C|1372

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22