IL_7AQD_061

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UAU

Length

5 nucleotides

Bulged bases

7AQD|1|A|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_061 not in the Motif Atlas

Geometric match to IL_7RQB_059

Geometric discrepancy: 0.2906

The information below is about IL_7RQB_059

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7AQD|1|A|G|1496
7AQD|1|A|G|1497
*
7AQD|1|A|U|1505
7AQD|1|A|A|1506
7AQD|1|A|U|1507

Current chains

Chain A

23S ribosomal RNA

Nearby chains