IL_7AQD_071

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7AQD|1|A|G|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_071 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1021

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7AQD|1|A|C|1731
7AQD|1|A|G|1732
7AQD|1|A|U|1733
7AQD|1|A|A|1734
7AQD|1|A|A|1735
7AQD|1|A|C|1736
*
7AQD|1|A|G|1741
7AQD|1|A|G|1742
7AQD|1|A|A|1743
7AQD|1|A|G|1744
7AQD|1|A|A|1745
7AQD|1|A|A|1746
7AQD|1|A|G|1747

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2