IL_7AQD_072

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

7AQD|1|A|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_072 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2144

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AQD|1|A|U|1756
7AQD|1|A|G|1757
7AQD|1|A|U|1758
7AQD|1|A|U|1759
7AQD|1|A|A|1760
7AQD|1|A|G|1761
*
7AQD|1|A|C|1772
7AQD|1|A|G|1773
7AQD|1|A|A|1774
7AQD|1|A|G|1775
7AQD|1|A|A|1776

Current chains

Chain A

23S ribosomal RNA

Nearby chains