IL_7AQD_081

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_081 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.1006

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

7AQD|1|A|G|1962
7AQD|1|A|C|1963
*
7AQD|1|A|G|1993
7AQD|1|A|C|1994
7AQD|1|A|A|1995
7AQD|1|A|C|1996

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA