IL_7AQD_092

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGGAAA*UGGAG

Length

13 nucleotides

Bulged bases

7AQD|1|A|G|2161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_092 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4664

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7AQD|1|A|C|2158
7AQD|1|A|U|2159
7AQD|1|A|U|2160
7AQD|1|A|G|2161
7AQD|1|A|G|2162
7AQD|1|A|A|2163
7AQD|1|A|A|2164
7AQD|1|A|A|2165
*
7AQD|1|A|U|2184
7AQD|1|A|G|2185
7AQD|1|A|G|2186
7AQD|1|A|A|2187
7AQD|1|A|G|2188

Current chains

Chain A

23S ribosomal RNA

Nearby chains