IL_7AQD_100
3D structure
- PDB id
- 7AQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial RQC complex (Translocating State)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AQD_100 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.1279
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
7AQD|1|A|A|2488
7AQD|1|A|U|2489
7AQD|1|A|C|2490
*
7AQD|1|A|G|2518
7AQD|1|A|G|2519
7AQD|1|A|U|2520
7AQD|1|A|U|2521
7AQD|1|A|U|2522
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain T
- Transfer RNA; tRNA
- Chain V
- 50S ribosomal protein L27
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