IL_7AQD_101

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_101 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1631

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7AQD|1|A|C|2495
7AQD|1|A|C|2496
7AQD|1|A|A|2497
7AQD|1|A|A|2498
7AQD|1|A|G|2499
*
7AQD|1|A|C|2509
7AQD|1|A|G|2510
7AQD|1|A|A|2511
7AQD|1|A|C|2512
7AQD|1|A|G|2513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain T

Transfer RNA; tRNA

Chain f

50S ribosomal protein L36