IL_7AQD_115

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_115 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1009

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7AQD|1|A|U|2872
7AQD|1|A|G|2873
7AQD|1|A|G|2874
7AQD|1|A|A|2875
7AQD|1|A|A|2876
7AQD|1|A|G|2877
*
7AQD|1|A|U|2890
7AQD|1|A|G|2891
7AQD|1|A|G|2892
7AQD|1|A|A|2893
7AQD|1|A|G|2894

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain a

50S ribosomal protein L19