IL_7AS8_020

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7AS8|1|A|G|848, 7AS8|1|A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0838

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|G|721
7AS8|1|A|A|722
7AS8|1|A|A|723
7AS8|1|A|A|724
7AS8|1|A|C|725
*
7AS8|1|A|G|846
7AS8|1|A|A|847
7AS8|1|A|G|848
7AS8|1|A|A|849
7AS8|1|A|U|850
7AS8|1|A|A|851
7AS8|1|A|G|852
7AS8|1|A|C|853

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain P

50S ribosomal protein L15