IL_7AS8_033

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

7AS8|1|A|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_033 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3479

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7AS8|1|A|G|927
7AS8|1|A|G|928
7AS8|1|A|G|929
7AS8|1|A|C|930
*
7AS8|1|A|G|940
7AS8|1|A|U|941
7AS8|1|A|U|942
7AS8|1|A|A|943
7AS8|1|A|C|944

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH