IL_7AS8_042

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

7AS8|1|A|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_042 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7AS8|1|A|C|1089
7AS8|1|A|U|1090
7AS8|1|A|U|1091
7AS8|1|A|A|1092
7AS8|1|A|G|1093
7AS8|1|A|A|1094
7AS8|1|A|C|1095
7AS8|1|A|A|1096
7AS8|1|A|A|1097
*
7AS8|1|A|U|1154
7AS8|1|A|C|1155
7AS8|1|A|G|1156
7AS8|1|A|A|1157
7AS8|1|A|G|1158

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain L

50S ribosomal protein L10

Chain j

50S ribosomal protein L36