IL_7AS8_047

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7AS8|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_047 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1194

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7AS8|1|A|C|1248
7AS8|1|A|U|1249
7AS8|1|A|G|1250
7AS8|1|A|U|1251
7AS8|1|A|G|1252
7AS8|1|A|A|1253
7AS8|1|A|A|1254
7AS8|1|A|G|1255
*
7AS8|1|A|U|1274
7AS8|1|A|G|1275
7AS8|1|A|G|1276
7AS8|1|A|A|1277
7AS8|1|A|G|1278

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L20