3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_050 not in the Motif Atlas
Homologous match to IL_7RQB_050
Geometric discrepancy: 0.108
The information below is about IL_7RQB_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

7AS8|1|A|G|1349
7AS8|1|A|U|1350
7AS8|1|A|U|1351
7AS8|1|A|U|1352
*
7AS8|1|A|A|1648
7AS8|1|A|C|1649

Current chains

Chain A
23S rRNA

Nearby chains

Chain X
50S ribosomal protein L23
Chain h
50S ribosomal protein L34

Coloring options:


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