IL_7AS8_068

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

7AS8|1|A|G|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_068 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1334

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|A|1714
7AS8|1|A|C|1715
7AS8|1|A|U|1716
7AS8|1|A|C|1717
7AS8|1|A|G|1718
7AS8|1|A|G|1719
*
7AS8|1|A|C|2019
7AS8|1|A|U|2020
7AS8|1|A|G|2021
7AS8|1|A|U|2022

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain O

50S ribosomal protein L14