IL_7AS8_073

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7AS8|1|A|C|1867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_073 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1073

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AS8|1|A|C|1866
7AS8|1|A|C|1867
7AS8|1|A|G|1868
7AS8|1|A|G|1869
*
7AS8|1|A|C|1931
7AS8|1|A|G|1932

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Uncharacterized protein YabO

Chain E

50S ribosomal protein L2