IL_7AS8_076

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_076 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1764

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7AS8|1|A|U|1880
7AS8|1|A|U|1881
7AS8|1|A|A|1882
7AS8|1|A|A|1883
7AS8|1|A|G|1884
*
7AS8|1|A|U|1916
7AS8|1|A|G|1917
7AS8|1|A|A|1918
7AS8|1|A|A|1919
7AS8|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2