3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAG*UGGG
Length
7 nucleotides
Bulged bases
7AS8|1|A|G|2267
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_085 not in the Motif Atlas
Homologous match to IL_7RQB_082
Geometric discrepancy: 0.1418
The information below is about IL_7RQB_082
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_38958.7
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7AS8|1|A|C|2110
7AS8|1|A|A|2111
7AS8|1|A|G|2112
*
7AS8|1|A|U|2265
7AS8|1|A|G|2266
7AS8|1|A|G|2267
7AS8|1|A|G|2268

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L2
Chain b
50S ribosomal protein L28

Coloring options:


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