IL_7AS8_101

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_101 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0878

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7AS8|1|A|U|2681
7AS8|1|A|U|2682
7AS8|1|A|A|2683
7AS8|1|A|G|2684
7AS8|1|A|U|2685
7AS8|1|A|A|2686
7AS8|1|A|C|2687
*
7AS8|1|A|G|2692
7AS8|1|A|G|2693
7AS8|1|A|A|2694
7AS8|1|A|C|2695
7AS8|1|A|C|2696
7AS8|1|A|G|2697

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6