3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGUAC*GGUAG
Length
10 nucleotides
Bulged bases
7AS8|1|A|U|2718, 7AS8|1|A|A|2719
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_103 not in the Motif Atlas
Homologous match to IL_4WF9_102
Geometric discrepancy: 0.0845
The information below is about IL_4WF9_102
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

7AS8|1|A|U|2716
7AS8|1|A|G|2717
7AS8|1|A|U|2718
7AS8|1|A|A|2719
7AS8|1|A|C|2720
*
7AS8|1|A|G|2747
7AS8|1|A|G|2748
7AS8|1|A|U|2749
7AS8|1|A|A|2750
7AS8|1|A|G|2751

Current chains

Chain A
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L3
Chain R
50S ribosomal protein L17
Chain T
50S ribosomal protein L19

Coloring options:


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