IL_7AS8_105

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

7AS8|1|A|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_105 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.0972

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7AS8|1|A|G|2766
7AS8|1|A|A|2767
7AS8|1|A|U|2768
7AS8|1|A|A|2769
7AS8|1|A|A|2770
7AS8|1|A|G|2771
*
7AS8|1|A|U|2791
7AS8|1|A|G|2792
7AS8|1|A|A|2793
7AS8|1|A|A|2794
7AS8|1|A|G|2795
7AS8|1|A|C|2796

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain N

50S ribosomal protein L13

Chain j

50S ribosomal protein L36