IL_7ASM_007

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_007 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.0771

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ASM|1|A|G|190
7ASM|1|A|A|191
7ASM|1|A|G|192
7ASM|1|A|A|193
7ASM|1|A|A|194
7ASM|1|A|C|195
7ASM|1|A|U|196
7ASM|1|A|G|197
*
7ASM|1|A|C|204
7ASM|1|A|U|205
7ASM|1|A|U|206
7ASM|1|A|A|207
7ASM|1|A|G|208
7ASM|1|A|U|209
7ASM|1|A|A|210
7ASM|1|A|C|211
7ASM|1|A|C|212

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28