IL_7ASM_043

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7ASM|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.087

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7ASM|1|A|C|1246
7ASM|1|A|G|1247
7ASM|1|A|U|1248
7ASM|1|A|U|1249
7ASM|1|A|G|1250
7ASM|1|A|A|1251
7ASM|1|A|A|1252
7ASM|1|A|G|1253
*
7ASM|1|A|U|1272
7ASM|1|A|G|1273
7ASM|1|A|G|1274
7ASM|1|A|A|1275
7ASM|1|A|G|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L20