IL_7ASM_056

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_056 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3443

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7ASM|1|A|G|1518
7ASM|1|A|U|1519
7ASM|1|A|A|1520
7ASM|1|A|A|1521
7ASM|1|A|G|1522
7ASM|1|A|G|1523
*
7ASM|1|A|C|1557
7ASM|1|A|U|1558
7ASM|1|A|G|1559
7ASM|1|A|A|1560
7ASM|1|A|G|1561
7ASM|1|A|C|1562

Current chains

Chain A

23S rRNA

Nearby chains