IL_7ASM_061

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

7ASM|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_061 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0766

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7ASM|1|A|A|1713
7ASM|1|A|C|1714
7ASM|1|A|U|1715
7ASM|1|A|C|1716
7ASM|1|A|G|1717
7ASM|1|A|G|1718
*
7ASM|1|A|C|2017
7ASM|1|A|U|2018
7ASM|1|A|G|2019
7ASM|1|A|U|2020

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L14