IL_7ASM_062

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7ASM|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_062 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1071

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|C|1730
7ASM|1|A|G|1731
7ASM|1|A|U|1732
7ASM|1|A|A|1733
7ASM|1|A|A|1734
7ASM|1|A|C|1735
*
7ASM|1|A|G|1740
7ASM|1|A|G|1741
7ASM|1|A|A|1742
7ASM|1|A|G|1743
7ASM|1|A|A|1744
7ASM|1|A|A|1745
7ASM|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2