IL_7ASM_079

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_079 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2208

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ASM|1|A|A|2123
7ASM|1|A|U|2124
7ASM|1|A|U|2125
7ASM|1|A|C|2126
*
7ASM|1|A|G|2217
7ASM|1|A|G|2218
7ASM|1|A|C|2219
7ASM|1|A|U|2220

Current chains

Chain A

23S rRNA

Nearby chains