IL_7ASM_094

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

7ASM|1|A|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_094 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.0888

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7ASM|1|A|U|2549
7ASM|1|A|G|2550
*
7ASM|1|A|C|2567
7ASM|1|A|A|2568
7ASM|1|A|A|2569
7ASM|1|A|G|2570

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain H

50S ribosomal protein L13