IL_7ASM_105

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_105 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0736

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ASM|1|A|U|2867
7ASM|1|A|G|2868
7ASM|1|A|G|2869
7ASM|1|A|A|2870
7ASM|1|A|A|2871
7ASM|1|A|G|2872
*
7ASM|1|A|U|2885
7ASM|1|A|G|2886
7ASM|1|A|G|2887
7ASM|1|A|A|2888
7ASM|1|A|G|2889

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19