IL_7ASN_045

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASN_045 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.2564

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7ASN|1|A|U|1394
7ASN|1|A|G|1395
7ASN|1|A|A|1396
7ASN|1|A|G|1397
7ASN|1|A|G|1398
*
7ASN|1|A|C|1407
7ASN|1|A|G|1408
7ASN|1|A|U|1409
7ASN|1|A|A|1410
7ASN|1|A|G|1411

Current chains

Chain A

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain F

50S ribosomal protein L2

Chain V

50S ribosomal protein L28