IL_7ASO_010

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_010 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3933

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7ASO|1|X|G|327
7ASO|1|X|A|328
7ASO|1|X|A|329
7ASO|1|X|C|330
*
7ASO|1|X|G|340
7ASO|1|X|U|341
7ASO|1|X|C|342

Current chains

Chain X

16S

Nearby chains

Chain A

30S ribosomal protein S20