IL_7ASO_024

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_024 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.3366

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7ASO|1|X|C|1440
7ASO|1|X|C|1441
7ASO|1|X|C|1442
*
7ASO|1|X|G|1482
7ASO|1|X|G|1483

Current chains

Chain X

16S

Nearby chains

Chain N

50S ribosomal protein L14

Chain Y

Large subunit ribosomal RNA; LSU rRNA