IL_7ASO_026

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_026 not in the Motif Atlas

Homologous match to IL_4LFB_063

Geometric discrepancy: 0.4015

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ASO|1|X|G|1446
7ASO|1|X|C|1447
7ASO|1|X|C|1448
*
7ASO|1|X|G|1476
7ASO|1|X|U|1477
7ASO|1|X|C|1478

Current chains

Chain X

16S

Nearby chains

Chain A

30S ribosomal protein S20

Chain Y

Large subunit ribosomal RNA; LSU rRNA