IL_7ASO_040

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_040 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.1503

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7ASO|1|Y|A|581
7ASO|1|Y|G|582
7ASO|1|Y|A|583
7ASO|1|Y|G|584
*
7ASO|1|Y|U|597
7ASO|1|Y|G|598
7ASO|1|Y|A|599
7ASO|1|Y|U|600

Current chains

Chain Y

23S

Nearby chains

Chain M

50S ribosomal protein L13

Chain S

50S ribosomal protein L20