IL_7ASO_045

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ASO|1|Y|G|846, 7ASO|1|Y|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_045 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1289

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|G|719
7ASO|1|Y|A|720
7ASO|1|Y|A|721
7ASO|1|Y|A|722
7ASO|1|Y|C|723
*
7ASO|1|Y|G|844
7ASO|1|Y|A|845
7ASO|1|Y|G|846
7ASO|1|Y|A|847
7ASO|1|Y|U|848
7ASO|1|Y|A|849
7ASO|1|Y|G|850
7ASO|1|Y|C|851

Current chains

Chain Y

23S

Nearby chains

Chain J

50S ribosomal protein L4

Chain O

50S ribosomal protein L15