IL_7ASO_075

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7ASO|1|Y|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_075 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1309

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7ASO|1|Y|C|1730
7ASO|1|Y|G|1731
7ASO|1|Y|U|1732
7ASO|1|Y|A|1733
7ASO|1|Y|A|1734
7ASO|1|Y|C|1735
*
7ASO|1|Y|G|1740
7ASO|1|Y|G|1741
7ASO|1|Y|A|1742
7ASO|1|Y|G|1743
7ASO|1|Y|A|1744
7ASO|1|Y|A|1745
7ASO|1|Y|G|1746

Current chains

Chain Y

23S

Nearby chains

Chain X

Small subunit ribosomal RNA; SSU rRNA