IL_7ASO_077

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7ASO|1|Y|U|1828, 7ASO|1|Y|U|1843, 7ASO|1|Y|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_077 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1244

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ASO|1|Y|U|1825
7ASO|1|Y|G|1826
7ASO|1|Y|C|1827
7ASO|1|Y|U|1828
7ASO|1|Y|A|1829
7ASO|1|Y|A|1830
7ASO|1|Y|A|1831
*
7ASO|1|Y|U|1840
7ASO|1|Y|G|1841
7ASO|1|Y|A|1842
7ASO|1|Y|U|1843
7ASO|1|Y|G|1844
7ASO|1|Y|U|1845
7ASO|1|Y|A|1846
7ASO|1|Y|U|1847
7ASO|1|Y|A|1848

Current chains

Chain Y

23S

Nearby chains

Chain X

Small subunit ribosomal RNA; SSU rRNA