IL_7ASO_079

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7ASO|1|Y|A|1926, 7ASO|1|Y|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_079 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.1773

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7ASO|1|Y|U|1868
7ASO|1|Y|G|1869
*
7ASO|1|Y|U|1925
7ASO|1|Y|A|1926
7ASO|1|Y|A|1927
7ASO|1|Y|A|1928

Current chains

Chain Y

23S

Nearby chains

Chain X

Small subunit ribosomal RNA; SSU rRNA