IL_7ASO_080

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_080 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.4796

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7ASO|1|Y|G|1873
7ASO|1|Y|A|1874
7ASO|1|Y|A|1875
7ASO|1|Y|G|1876
*
7ASO|1|Y|C|1920
7ASO|1|Y|C|1921

Current chains

Chain Y

23S

Nearby chains

Chain X

Small subunit ribosomal RNA; SSU rRNA